IBG-2: PlantSciences

Growth and Metabolism

Ecosystem Dynamics

Transport dynamics

Enabling Technologies

	Groups
	ecoNMR
	TracerTech
	Image Processing
	Screening

Jülich Plant Phenotyping Centre

Third party funds and partners

Teaching (classes)

IBG-2: Pflanzenwissenschaften
Forschungsbereich Plant Enabling Technologies

Publikationen des Forschungsbereichs

Publications 2010
Beer, S.; Streun, M.; Hombach, T.; Bühler, J.; Jahnke, S.; Khodaverdi, M.; Larue, H.; Minwuyelet, S.; Parl, C.; Roeb, G.; Schurr, U.; Ziemons, K. Design and initial performance of PlanTIS: a high-resolution positron emission tomograph for plants Physics in Medicine and Biology 55 (2010) 3, 635 - 646 10.1088/0031-9155/55/3/006 http://www.iop.org/EJ/abstract/0031-9155/55/3/006


Beisel, K.G.; Jahnke, S.; Hofmann, D.; Köppchen, S.; Schurr, U.; Matsubara, S. Continuous Turnover of Carotenes and Chlorophyll a in Mature Leaves of Arabidopsis Revealed by ¹⁴CO₂ Pulse-Chase Labeling Plant Physiology 152 (2010) 4, 2188 -2199 10.1104/pp.109.151647 http://dx.doi.org/10.1104/pp.109.151647


Bühler J, Huber G, , Schmid F and Blümler P (2010) Analytical model for long-distance tracer-transport in plants J. Theoretical Biology (2010), 270, 70-79.


Metzner, R.; Schneider, H.U.; Breuer, U.; Thorpe, M.R.; Schurr, U.; Schröder, W. H. Tracing cationic nutrients from xylem into stem tissue of Phaseolus vulgaris by stable isotope tracers and cryo-secondary ion mass spectrometry Plant Physiology 152 (2010), 1030 - 1043 10.1104/pp.109.143776


Metzner, R.; Thorpe, M.R.; Breuer, U.; Blümler, P.; Schurr, U.; Schneider, H.U.; Schroeder, W.H. Contrasting dynamics of water and mineral nutrients in sterms shown by stable isotope tracers and cryo-SIMS Plant, Cell and Environment 33 (2010) 8, 1393 - 1407 10.1111/j.1365-3040.2010.02157.x http://dx.doi.org/10.1111/j.1365-3040.2010.02157.x


Meyer, R.C.; Kusterer, B.; Lisec, J.; Steinfath, M.; Becher, M.; Scharr, H.; Melchinger, A.E.; Selbig, J.; Schurr, U.; Willmitzer, L.; Altmann, T.* QTL analysis of early stage heterosis for biomass in Arabidopsis Theoretical and Applied Genetics (TAG) 120 (2010) 2, 227 - 237 10.1007/s00122-009-1074-6 http://dx.doi.org/10.1007/s00122-009-1074-6


Mullendore, D.L.; Windt, C.W.; Van As, H.; Knoblauch, M. Sieve Tube Geometry in Relation to Phloem Flow The Plant Cell 22 (2010), 579 - 593 http://edepot.wur.nl/136659


Pieruschka, R.; Chavarria-Krauser, A.; Schurr, U.; Jahnke, S. Photosynthesis in lightfleck areas of homobaric and heterobaric leaves Journal of Experimental Botany 61 (2010) 4, 1031 - 1039 http://www.ncbi.nlm.nih.gov/pubmed/20008895


Soltner, H.; Blümler, P. Dipolar Halbach Magnet Stacks Made from Identically Shaped Permanent Magnets for Magnetic Resonance Concepts in Magnetic Resonance Part A 36A (2010) 4, 211 - 222 10.1002/cmr.a.20165 http://dx.doi.org/10.1002/cmr.a.20165

Publications 2009	top
Agulles-Pedrós, L.; Acosta, R.H.; Blümler, P.; Spiess, H.W. Resolution enhancement in MRI of laser polarized 3He by control of diffusion Journal of Magnetic Resonance* 197 (2009) 1, 197 - 62 http://dx.doi.org/doi:10.1016/j.jmr.2008.12.003


Barroso, V.C.; Raich, H.; Blümler, P.; Wilhelm, M. Double dipolar halbach array for rheological measurements on magnetic fluids at variable magnetic flux density B Journal of Physics : Conference Series 149 (2009), 012102 http://dx.doi.org/10.1088/1742-6596/149/1/012102


Bauer, C.; Raich, H.; Jeschke, G.; Blümler, P. Design of a permanent magnet with a mechanical sweep suitable for variable-temperature continuous-wave and pulsed EPR spectroscopy Journal of Magnetic Resonance* 198 (2009) 2, 222 - 227 http://dx.doi.org/10.1016/j.jmr.2009.02.010


Biskup, B.; Scharr, H.; Fischbach, A.; Wiese-Klinkenberg, A.; Schurr, U.; Walter, A. Diel growth cycle of isolated leaf discs analyzed with a novel, high-throughput three-dimensional imaging method is identical to that of intact leaves Plant Physiology 149 (2009), 1452 - 1461 http://dx.doi.org/10.1104/pp.108.134486


Jahnke, S.; Menzel, M. I.; van Dusschoten, D.; Roeb, G. W.; Bühler, J.; Minwuyelet, S.; Blümler, P.; Temperton, V. M.; Hombach, T.; Streun, M.; Beer, S.; Khodaverdi, M.; Ziemons, K.; Coenen, H. H.; Schurr, U. Combined MRI-PET dissects dynamic changes in plant structures and functions The Plant Journal* 59 (2009), 634 - 644 http://www3.interscience.wiley.com/journal/122308564/abstract 10.1111/j.1365-313X.2009.03888.x


Menzel, M.I.; Tittmann, S.; Bühler, J.; Preis, St.; Wolters, N.; Jahnke, S.; Walter, A.; Chlubek, A.; Leon, A.; Hermes, N.; Offenhäuser, A.; Gilmer, F.; Blümler, P.; Schurr, U.; Krause, H.-J. Non-Invasive Determination of Plant Biomass with Microwave Resonators Plant, Cell and Environment 32 (2009), 368 - 379 http://www3.interscience.wiley.com/journal/121604267/abstract


Nagel, K.A.; Kastenholz, B.; Jahnke, S.; van Dusschoten, D.; Aach, T.; Mühlich, M.; Truhn, D.; Scharr, H.; Terjung, St.; Walter, A.; Schurr, U. Temperature responses of roots: impact on growth, root system architecture and implications for phenotyping Functional Plant Biology* 36 (2009) 11, 947 - 959 10.1071/FP09184 http://dx.doi.org/10.1071/FP09184


Pohlmeier, A.; van Dusschoten, D.; Weihermüller, L.; Schurr, U.; Vereecken, H. Imaging water fluxes in porous media by magnetic resonance imaging using D2O as a tracer Magnetic Resonance Imaging 27 (2009) 2, 285 - 292 http://dx.doi.org/10.1016/j.mri.2008.06.007


Stingaciu, L.-R.; Pohlmeier, A.; Blümler, P.; Weihermüller, L.; van Dusschoten, D.; Stapf, S.; Vereecken, H. Characterization of unsaturated porous media by high-field and low-field NMR relaxometry Water Resources Research 45 (2009), W08412 10.1029/2008WR007459 http://dx.doi.org/10.1029/2008WR007459


Windt, C. W.; Gerkema, E.; Van As, H. Most Water in the Tomato Truss Is Imported through the Xylem, Not the Phloem: A Nuclear Magnetic Resonance Flow Imaging Study Plant Physiology 151 (2009) 1, 830 - 842

Publications 2008	top
Armstrong, B. D.; Lingwood, M.D.; McCarney, E.R.; Brown, E.R.; Blümler, P.; Han, S.* Portable X-band system for solution state dynamic nuclear polarization Journal of Magnetic Resonance 191 (2008) 2, 273 - 281 !-- url-w -->http://dx.doi.org/10.1016/j.jmr.2008.01.004


Chavarria-Krauser, A.; Nagel, K. A.; Palme, K.; Schurr, U.; Walter, A.; Scharr, H. Spatio-temporal quantification of differential growth processes in root growth zones based on a novel combination of image sequence processing and refined concepts describing curvature production New Phytologist* 177 (2008) 3, 811 - 821 http://dx.doi.org/10.1111/j.1469-8137.2007.02299.x


Kahle, S.; Nussbaum, W.; Hehn, M.; Raich, H.P.; Wilhelm, M.; Blümler, P. Combination of NMR relaxometry and mechanical testing during vulcanization Kautschuk Gummi Kunststoffe* 3 (2008), 92 - 94 http://imperia.mi-verlag.de/imperia/md/content/ai/pv/fachartikel/kg/2008/03/kg08_03_092.pdf


Mamisch, T.Ch.; Menzel, M. I.; Welsch, G. H.; Bittersohl, B.; Salomonowitz, E.; Szomolanyi, P.; Kordelle, J.; Marlovits, St.; Trattnig, S. Steady-state diffusion imaging for MR in-vivo evaluation of reparative cartilage after matrix-associated autologous chondrocyte transplantation at 3 Tesla - preliminary results European Journal of Radiology 65 (2008), 72 - 79 http://dx.doi.org/10.1016/j.ejrad.2007.09.015


Pieruschka, R.; Chavarría-Krauser, A.; Cloos, K.; Scharr, H.; Schurr, U.; Jahnke, S. Photosynthesis can be enhanced by lateral CO2 diffusion inside leaves over distances of several millimeters New Phytologist 178 (2008), 335 - 347 http://dx.doi.org/10.1111/j.1469-8137.2008.02368.x


Weglaz, W. P.; Hermelaar, M.; van der Linden, K.; Franciosi, N.; van Dalen, G.; Windt, C.W.; Blonk, H.; van Duynhoven, J.* Real-time mapping of moisture migration in cereal based food systems with Aw contrast by means of MRI Food Chemistry 106 (2008), 1366 - 1374 http://dx.doi.org/10.1016/j.foodchem.2007.04.077

Publications 2007	top
Anferova, S.; Anferov, V.; Arnold, J.; Talnishnikh, E.; Voda, M. A.; Kupferschläger, K.; Blümler, P.; Clauser, Ch.; Blümich, B. Improved Halbach sensor for NMR scanning of drill cores Magnetic Resonance Imaging 25 (2007) 4, 474 - 480 10.1016/j.mri.2006.11.016 http://dx.doi.org/10.1016/j.mri.2006.11.016


Biskup, B.; Scharr, H.; Schurr, U.; Rascher, U. A stereo imaging system for measuring structural parameters of plant canopies Plant, Cell and Environment 30 (2007), 1299 - 1308 10.1111/j.1365-3040.2007.01702.x http://dx.doi.org/10.1111/j.1365-3040.2007.01702.x


Boonman, A.; Prinsen, E.; Gilmer, F.; Schurr, U.; Peeters, A. J. M.; Voesenek, L.A.C.J.; Pons, T. L.* Cytokinin import rate as a signal for photosynthetic acclimation to canopy light gradients Plant Physiology 143 (2007), 1841 - 1852 10.1104/pp.106.094631 http://dx.doi.org/10.1104/pp.106.094631


Haiduc, A. M.; Trezza, E. E.; van Dusschoten, D.; Reszka, A. A.; van Duynhoven, J. P. M. Non-invasive through-package assessment of the microstructural quality of a model food emulsion by the NMR MOUSE LWT - Food Science and Technology 40 (2007), 737 - 743 10.1016/j.lwt.2006.02.026 http://dx.doi.org/10.1016/j.lwt.2006.02.026


Jahnke, S.; Pieruschka, R. Lateral gas diffusion in the mesophyll can contribute to CO2 fixation in homobaric leaves Photosynthesis Research 91 (2007), 219


Loivamäki, M.; Gilmer, F.; Fischbach, R. J.; Sörgel, Ch.; Bachl, A.; Walter, A.; Schnitzler, J.-P.* Arabidopsis, a model to study biological functions of isoprene emission? Plant Physiology 144 (2007), 1066 - 1078 http://dx.doi.org/10.1104/pp.107.098509


Menzel, M. I.; Oros-Peusquens, A.-M.; Pohlmeier, A.; Shah, N. J.; Schurr, U.; Schneider, H. U. Comparing 1H-NMR imaging and relaxation mapping of German white asparagus from five different cultivation sites Journal of Plant Nutrition and Soil Science - Zeitschrift für Pflanzenernährung und Bodenkunde 170 (2007) 1, 24 - 38 http://dx.doi.org/10.1002/jpln.200625114


Pohlmeier, A.; Oros-Peusquens, A. M.; Javaux, M.; Menzel, M. I.; Vereecken, H.; Shah, N. J. Investigation of water content and dynamics of a Ricinus root system in unsaturated sand by means of SPRITE and CISS: correlation of root architecture and water content change Magnetic Resonance Imaging 25 (2007) 4, 579 - 580 10.1016/j.mri.2007.01.090 http://dx.doi.org/10.1016/j.mri.2007.01.090


van Duynhoven, J. P. M.; Maillet, B.; Schell, J.; Tronquet, M.; Goudappel, G.-J. W.; Trezza, E.; Bulbarello, A.; Dusschoten van, D. A rapid benchtop NMR method for determination of droplet size distributions in food emulsions European Journal of Lipid Science and Technology* 109 (2007), 1095 - 1103 10.1002/ejlt.200700019 http://dx.doi.org/10.1002/ejlt.200700019


Walter, A.; Scharr, H.; Gilmer, F.; Zierer, R.; Nagel, K. A.; Ernst, M.; Wiese, A.; Virnich, O.; Christ, M. M.; Uhlig, B.; Jünger, S.; Schurr, U. Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: a setup and procedure designed for rapid optical phenotyping of different plant species New Phytologist* 174 (2007), 447 - 455 http://dx.doi.org/10.1111/j.1469-8137.2007.02002.x

Publications 2006	top
Acosta, R. H.; Agulles-Pedrós, L.; Komin, S.; Sebastianai, D.; Spiess, H. W.; Blümler, P. Diffusion in binary gas mixtures studied by NMR of hyperpolarized gases and molecular dynamic simulations Physical Chemistry Chemical Physics* 8 (2006), 4182 - 4188 10.1039/b609316g http://dx.doi.org/10.1039/b609316g


Acosta, R. H.; Blümler, P.; Agulles-Petrós, L.; Morbach, A. E.; Schmiedeskamp, J.; Herweling, A.; Wolf, U.; Scholz, A.; Schreiber, W. G.; Heil, W.; Thelen, M.; Spies, H.-W.* Controlling diffusion of 3He by buffer gases: a structural contrast agent in lung MRI Journal of Magnetic Resonance Imaging 24 (2006), 6, 1291 - 1297 10.1002/jmri.20777 http://dx.doi.org/10.1002/jmri.20777


Baumer, D.; Brunner, E.; Blümler, P.; Zänker, D. G.; Spies, H. W. NMR spectroscopy of laser-polarized 129Xe under continuous flow: A method to study aqueous solution of biomolecules Angewandte Chemie-International Edition 45 (2006), 43, 7282 - 7284 10.1002/anie.200601008 http://dx.doi.org/10.1002/anie.200601008


Felsberg, R. E.; Forssén, V. T.; Scharr, H. Channel smoothing: Efficient robust smoothing of low-level signal features IEEE Transactions on Pattern Analysis and Machine Intelligence 28 (2006), 2, 209 - 222 10.1109/TPAMI.2006.29 http://dx.doi.org/10.1109/TPAMI.2006.29


Jahnke, S.; Pieruschka, R.; Scharr, H. A simple approach to estimate homobaricity of leaves by imaging water infiltration of leaves Comparative Biochemistry and Physiology A-Molecular & Integrative Physiology 143 (2006), 4, Suppl. 1, 144, P3.15 10.1016/j.cbpa.2006.01.058 http://dx.doi.org/10.1016/j.cbpa.2006.01.058


Jahnke, S.; Pieruschka, R. Air pressure in clamp-on leaf chambers: a neglected issue in gas exchange measurements Journal of Experimental Botany 57 (2006), 11, 2553 - 2561


Mitchell, J.; Blümler, P.; McDonald, P. J.* Spatially resolved nuclear magnetic resonance studies of planar samples Progress in Nuclear Magnetic Resonance Spectroscopy 48 (2006), 4, 161 - 181 10.1016/j.pnmrs.2006.04.001 http://dx.doi.org/10.1016/j.pnmrs.2006.04.001


Pieruschka, R.; Jahnke, S.; Schurr, U. Lateral diffusion of CO2 from shaded to illuminated leaf parts affects photosynthesis inside homobaric leaves under drought stress Comparative Biochemistry and Physiology A-Molecular & Integrative Physiology 143 (2006), 4, Suppl. 1, 152, P3.47 10.1016/j.cbpa.2006.01.058 http://dx.doi.org/10.1016/j.cbpa.2006.01.058


Pieruschka, R.; Schurr, U.; Jensen, M.; Wolff, W. F.; Jahnke, S. Lateral diffusion of CO2 from shaded to illuminated leaf parts affects photosynthesis inside homobaric leaves New Phytologist* 169 (2006), 779 - 788 10.1111/j.1469-8137.2005.01605.x http://dx.doi.org/10.1111/j.1469-8137.2005.01605.x


Schwachtje, J.; Minchin, P. E. H.; Jahnke, S.; van Dongen, J. T.; Schittko, U.; Baldwin, I. T. SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots Proceedings of the National Academy of Sciences of the United States of America 103 (2006), 34, 12935 - 12940 10.1073/pnas.0602316103 http://dx.doi.org/10.1073/pnas.0602316103

Publications 2005	top
Anferov, V.; Aneverova, S.; Blümich, B.; Blümler, P. Mobile NMR equipment for measurements of the pore size distributions of deep sea ocean drilling core samples Magnetic Resonance Imaging* 23 (2005), 431


Hoffmann, A.; Zimmermann, F.; Scharr, H.; Krömker, S.; Schulz, C. Instantaneous three-dimensional visualization of concentration distributions in turbulent flows with cross-plane laser-induced fluorescence imaging Applied Physics B 80 (2005), 1, 125 - 131 10.1007/s00340-004-1670-8 http://dx.doi.org/10.1007/s00340-004-1670-8


Lai, I.-L.; Scharr, H.; Chavarria-Krauser, A.; Küsters, R.; Jiunn-Tzong, W.; Chang-Hung, C.; Schurr, U.; Walter, A. Leaf growth dynamics of two congener gymnosperm tree species reflect the heterogeneity of light intensities given in their natural ecological niche Plant, Cell and Environment 28 (2005),12, 1496 - 1505 http://dx.doi.org/10.1111/j.1365-3040.2005.01386.x


Pieruschka, R.; Schurr, U.; Jahnke, S. Lateral gas diffusion inside leaves Journal of Experimental Botany 56 (2005), 413, 857 - 864 10.1093/jxb/eri072 http://dx.doi.org/10.1093/jxb/eri072

Publications 2004	top
Geigenberger, P.* Phloem import and storage metabolism are highly coordinated by the low oxygen concentrations within developing wheat seeds Plant Physiology 135 (2004), 1809 - 1821 http://dx.doi.org/10.1104/pp.104.040980

Publications 2003	top
Uttenweiler, D.; Weber, C.; Jähne, B.; Fink, R. H. A.; Scharr, H. Spatiotemporal anisotropic diffusion filtering to improve signal-to-noise ratios and object restoration in fluorescence microscopic image sequences Journal of Biomedical Optics 8 (2003), 1, 40 - 47 10.1117/1.1527627 http://dx.doi.org/10.1117/1.1527627

Publications 2002	top
Jahnke, S.; Krewitt, M.* Atmospheric CO2 concentration may directly affect leaf respiration measurement in tobacco, but not respiration itself Plant, Cell and Environment 25 (2002), 641 - 651


Keutgen, N.; Mukminah, F.; Roeb, G. W. Sink strength and photosynthetic capacity influence tuber development in sweet potato Journal of Horticultural Science and Biotechnology 77 (2002), 1, 106 - 115


Sohlenkamp, C.; Wood, C. C.; Roeb, G. W.; Udvardi, M. K.* Characterisation of Arabidopsis AtAMT2 : a high-affinity ammonium transporter of the plasma membrane Plant Physiology 130 (2002), 4, 1788 - 1796

IBG-2
Plant Enabling Technologies

ecoNMR
TracerTech
Image Processing
Screening

Enabling Technologies

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Publications
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Technologies

last change 24.02.2011 | ICG3 Admin | Print